RMSD at time 5
RMSD at time 10
RMSD at time 15
RMSD at time 20
RMSD at time 25
Movie showing how the error bars and averages converge. This is just over the first 40k trajectories (it gets pretty boring, visually, after that).
This is, in a way, a repeat of the plots from May 19 of a similar name.
By using the RMSD instead of the standard deviation, I think we account for any unfairness in the comparison due to sorting.