#title Sorted Frenkel, Local Harmonic Prefactor

dynamiq-r148 modified_frenkel_s00.inp > mod_frenkel_s00.out
dynamiq-r148 modified_frenkel_s01.inp > mod_frenkel_s01.out
dynamiq-r148 modified_frenkel_s02.inp > mod_frenkel_s02.out
dynamiq-r148 modified_frenkel_s03.inp > mod_frenkel_s03.out
dynamiq-r148 modified_frenkel_s04.inp > mod_frenkel_s04.out
dynamiq-r148 modified_frenkel_s05.inp > mod_frenkel_s05.out
dynamiq-r148 modified_frenkel_s06.inp > mod_frenkel_s06.out
dynamiq-r148 modified_frenkel_s07.inp > mod_frenkel_s07.out
dynamiq-r148 modified_frenkel_s08.inp > mod_frenkel_s08.out
dynamiq-r148 modified_frenkel_s09.inp > mod_frenkel_s09.out

dynamiq-r148 modified_metrop_s00.inp > mod_metrop_s00.out
dynamiq-r148 modified_metrop_s01.inp > mod_metrop_s01.out
dynamiq-r148 modified_metrop_s02.inp > mod_metrop_s02.out
dynamiq-r148 modified_metrop_s03.inp > mod_metrop_s03.out
dynamiq-r148 modified_metrop_s04.inp > mod_metrop_s04.out
dynamiq-r148 modified_metrop_s05.inp > mod_metrop_s05.out
dynamiq-r148 modified_metrop_s06.inp > mod_metrop_s06.out
dynamiq-r148 modified_metrop_s07.inp > mod_metrop_s07.out
dynamiq-r148 modified_metrop_s08.inp > mod_metrop_s08.out
dynamiq-r148 modified_metrop_s09.inp > mod_metrop_s09.out

dynamiq-r144 unsort_frenkel_s00.inp > unsort_frenkel_s00.out
dynamiq-r144 unsort_frenkel_s01.inp > unsort_frenkel_s01.out
dynamiq-r144 unsort_frenkel_s02.inp > unsort_frenkel_s02.out
dynamiq-r144 unsort_frenkel_s03.inp > unsort_frenkel_s03.out
dynamiq-r144 unsort_frenkel_s04.inp > unsort_frenkel_s04.out
dynamiq-r144 unsort_frenkel_s05.inp > unsort_frenkel_s05.out
dynamiq-r144 unsort_frenkel_s06.inp > unsort_frenkel_s06.out
dynamiq-r144 unsort_frenkel_s07.inp > unsort_frenkel_s07.out
dynamiq-r144 unsort_frenkel_s08.inp > unsort_frenkel_s08.out
dynamiq-r144 unsort_frenkel_s09.inp > unsort_frenkel_s09.out

~/research/src_trunk/utils/quicktest.py -p frenkel_s0 -b modified_frenkel_s0 -o mod_frenkel_final.data

~/research/src_trunk/utils/quicktest.py -p metrop_s0 -b modified_metrop_s0 -o mod_metrop_final.data

~/research/src_trunk/utils/quicktest.py -b unsort_frenkel_s0 -o unsort_frenkel_final.data


gnuplot byTraj_givenTime150.gnuplot
gnuplot byTraj_givenTime250.gnuplot

#blog <p>All of these are with the local harmonic prefactor. Obviously, the
#blog sorted Frenkel has an unfair advantage with few trajectories.</p>

researchblog.py mod_frenkel_locharm.job


# cleanup necessary because the r144 can't handle names with directory
# structure
for file in *unsort*
do
    seednum=`echo $file | sed 's/.*\(_s0[0-9]\).*/\1/'`
    mv -n $file unsort${seednum}/
done